Protein Mcp Server

Protein MCP Server is an open-source Model Context Protocol (MCP) server built for federated protein structure search, annotation, and analysis. It enables unified exploration of experimental (PDB) and predicted (AlphaFold) protein models via STDIO or HTTP, serving researchers, bioinformaticians, and developers who need powerful structure search, alignment, ligand tracking, annotation, and dataset profiling tools programmatically or via compatible environments like Claude Desktop, Cursor, or VS Code. It provides robust APIs for structure retrieval, similarity search, ligand mapping, structural alignment, collection analysis, and annotation extraction.